Class Hierarchy

django.apps.AppConfig
- lyprox.accounts.apps.AccountsConfig - Undocumented
- lyprox.riskpredictor.apps.RiskConfig - Undocumented
django.contrib.auth.forms.AuthenticationForm
- lyprox.accounts.forms.CustomAuthenticationForm - Custom form that allows assignment of classes to widgets. Note that due to the inheritance from AuthenticationForm the email field, which is used to log in users, is called username.
django.contrib.auth.mixins.LoginRequiredMixin
- lyprox.patients.views.CreateDatasetView - Create a dataset from a form.
- lyprox.patients.views.CreateDiagnoseView - Add a diagnose for a patient's lymphatic system.
- lyprox.patients.views.CreatePatientView - View used to create a new patient entry in the database.
- lyprox.patients.views.CreateTumorView - Create a tumor and add it to a given patient.
- lyprox.patients.views.DeleteDatasetView - Remove this dataset from the database, and all associated patients with it.
- lyprox.patients.views.DeleteDiagnoseView - Remove a particular diagnose frm a patient's entry.
- lyprox.patients.views.DeletePatientView - Remove this patient from the database.
- lyprox.patients.views.DeleteTumorView - Delete a patient's tumor.
- lyprox.patients.views.UpdateDiagnoseView - Change a patient's diagnose.
- lyprox.patients.views.UpdatePatientView - Update a given patient's information.
- lyprox.patients.views.UpdateTumorView - Update specifics of a patient's tumor.
- lyprox.riskpredictor.views.AddInferenceResultView - View for adding a new InferenceResult instance.
django.contrib.auth.mixins.UserPassesTestMixin
- lyprox.accounts.mixins.InstitutionCheckObjectMixin - Mixin that makes sure only users from the institution that created the patient can edit that patient's diagnose and tumor.
  - lyprox.patients.views.CreateDiagnoseView - Add a diagnose for a patient's lymphatic system.
  - lyprox.patients.views.CreateTumorView - Create a tumor and add it to a given patient.
  - lyprox.patients.views.DeleteDiagnoseView - Remove a particular diagnose frm a patient's entry.
  - lyprox.patients.views.DeleteTumorView - Delete a patient's tumor.
  - lyprox.patients.views.UpdateDiagnoseView - Change a patient's diagnose.
  - lyprox.patients.views.UpdateTumorView - Update specifics of a patient's tumor.
- lyprox.accounts.mixins.InstitutionCheckPatientMixin - Mixin that makes sure only users from the institution that created the patient can edit it.
  - lyprox.patients.views.DeletePatientView - Remove this patient from the database.
  - lyprox.patients.views.UpdatePatientView - Update a given patient's information.
django.contrib.auth.models.AbstractBaseUser
- lyprox.accounts.models.User - Extending the base functionality of the default User class.
django.contrib.auth.models.BaseUserManager
- lyprox.accounts.models.UserManager - No class docstring; 3/3 methods documented
django.contrib.auth.models.PermissionsMixin
- lyprox.accounts.models.User - Extending the base functionality of the default User class.
django.core.management.base.BaseCommand
- lyprox.accounts.management.commands.add_institutions.Command - Command to add institutions from a file or the command line.
- lyprox.accounts.management.commands.add_users.Command - Command to add users from a file or via arguments.
django.db.migrations.Migration
- lyprox.accounts.migrations.0001_initial.Migration - Undocumented
- lyprox.riskpredictor.migrations.0001_initial.Migration - Undocumented
django.db.models.CharField
- lyprox.accounts.models.CountryField - Undocumented
django.db.models.DateField
- lyprox.patients.fields.RobustDateField - DateField that doesn't raise a ValidationError when the date string isn't formated according to ISO (YYYY-MM-DD)
django.db.models.IntegerChoices
- lyprox.patients.models.Patient.M_stages - Defines the possible M-stages as choice class.
- lyprox.patients.models.Patient.N_stages - Defines the possible N-stages as choice class.
- lyprox.patients.models.Patient.T_stages - Defines the possible T-stages as choice class.
django.db.models.Model
- lyprox.accounts.models.Institution - Class for an institution like a hospital/clinic.
- lyprox.patients.models.Dataset - A collection of patients, usually importet from a CSV file in a GitHub repo.
- lyprox.patients.models.Diagnose - Model describing the diagnosis of one side of a patient's neck with regard to their lymphaitc metastatic involvement.
- lyprox.patients.models.Patient - The representation of a patient in the database.
- lyprox.patients.models.Tumor - Model to describe a patient's tumor in detail.
- lyprox.riskpredictor.models.InferenceResult - Results of an inference run of the lymph-model package.
django.db.models.TextChoices
- lyprox.patients.models.Tumor.Locations - The primary tumor locations in the head and neck region.
django.forms.ChoiceField
- lyprox.dataexplorer.forms.ThreeWayToggle - A toggle switch than can be in three different states: Positive/True, unkown/None and negative/False.
django.forms.Form
- lyprox.accounts.forms.InsitutionForm - Form for creating an institution. This is not yet in use or even functional.
- lyprox.dataexplorer.forms.DashboardForm - Form for querying the database.
- lyprox.patients.forms.DataFileForm - Accept and process a CSV file that can then be parsed to batch-create a number of patients at once.
- lyprox.riskpredictor.forms.DashboardForm - Form for the dashboard page.
django.forms.ModelForm
- lyprox.accounts.forms.SignupRequestForm - Form for requesting to be signed up by an administrator.
- lyprox.patients.forms.DatasetForm - Form to create and edit datasets, based on their model definition.
- lyprox.patients.forms.DiagnoseForm - Form to create and edit diagnoses, based on their model definition. Nothing special is happening here: Only some widgets are defined for the few fields of the models.Diagnose model and a loop over all implemented LNLs saves us some hard-coding of a long list of widgets for the node levels.
- lyprox.patients.forms.PatientForm - Form to create and edit patients, based on their model definition. Most notably, it includes custom cleaning methods like _compute_age that take - possibly sensitive - inputs and convert them into the - less sensitive - information we actually care about and want to store.
- lyprox.patients.forms.TumorForm - Form to create and edit tumors, based on their model definition. Very straightforward, not much custom validation. This class basically just defines how some of the fields that are already defined in models.Tumor...
- lyprox.riskpredictor.forms.InferenceResultForm - Form for creating a new InferenceResult instance.
django.forms.ModelMultipleChoiceField
- lyprox.dataexplorer.forms.DatasetMultipleChoiceField - Customize label description and add method that returns the logo URL for Datasets. The implementation is inspired by how the choices are implemented. But since some other functionality depends on how those choices are implemented, it cannot be changed easily.
django.forms.RadioSelect
- lyprox.dataexplorer.forms.ThreeWayToggleWidget - Widget that renders the three-way toggle button and allows to set the attributes of the individual inputs (radio buttons) as option_attrs as well as the attributes of the container as attrs.
django.forms.widgets.NumberInput
- lyprox.riskpredictor.forms.RangeInput - Undocumented
django.views.generic.CreateView
- lyprox.patients.views.CreateDatasetView - Create a dataset from a form.
- lyprox.patients.views.CreateDiagnoseView - Add a diagnose for a patient's lymphatic system.
- lyprox.patients.views.CreatePatientView - View used to create a new patient entry in the database.
- lyprox.patients.views.CreateTumorView - Create a tumor and add it to a given patient.
- lyprox.riskpredictor.views.AddInferenceResultView - View for adding a new InferenceResult instance.
django.views.generic.DeleteView
- lyprox.patients.views.DeleteDatasetView - Remove this dataset from the database, and all associated patients with it.
- lyprox.patients.views.DeleteDiagnoseView - Remove a particular diagnose frm a patient's entry.
- lyprox.patients.views.DeletePatientView - Remove this patient from the database.
- lyprox.patients.views.DeleteTumorView - Delete a patient's tumor.
django.views.generic.DetailView
- lyprox.patients.views.DatasetView - View that serves the respective Dataset CSV file.
- lyprox.patients.views.PatientDetailView - Show details of a particular patient.
- lyprox.riskpredictor.views.RiskPredictionView - View for the dashboard of the riskpredictor app.
django.views.generic.ListView
- lyprox.dataexplorer.views.DashboardView - Use the forms.DashboardForm and the patients.models.Patient model along with the query functions to extract the requested information from the database and render it into the HTML response displaying the lymphatic patterns of progression.
- lyprox.patients.views.DatasetListView - View that displays all datasets in a list.
- lyprox.patients.views.PatientListView - Renders a list of all patients in the database showing basic information and links to the individual entries. Depending from where this view is called, the list is filterable.
- lyprox.riskpredictor.views.ChooseInferenceResultView - View for choosing a InferenceResult instance.
django.views.generic.UpdateView
- lyprox.patients.views.UpdateDiagnoseView - Change a patient's diagnose.
- lyprox.patients.views.UpdatePatientView - Update a given patient's information.
- lyprox.patients.views.UpdateTumorView - Update specifics of a patient's tumor.
django_filters.FilterSet
- lyprox.patients.filters.PatientFilter - A django_filters.FilterSet which allows for easy filtering of a patient queryset for any fields defined here.
Exception
- lyprox.patients.ioports.ParsingError - Exception raised when the parsing of an uploaded CSV fails due to missing data columns.
- lyprox.patients.models.CorruptedDatasetError - Raised when there is reason to believe that the dataset is corrupted.
- lyprox.patients.models.LockedDatasetError - Raised when a Dataset or an associated entry was tried to be edited.
lyprox.accounts.forms.InsitutionForm.Meta - Undocumented
lyprox.accounts.forms.SignupRequestForm.Meta - Undocumented
lyprox.dataexplorer.forms.DatasetModelChoiceIndexer - Custom class with which one can access additional information from the model that is chosen by the DatasetMultipleChoiceField.
lyprox.dataexplorer.query.ModalityCombinor - Utility class that defines and helps to select the various methods for combining diagnoses from different modalities.
lyprox.loggers.FormLoggerMixin
- lyprox.accounts.forms.InsitutionForm - Form for creating an institution. This is not yet in use or even functional.
- lyprox.dataexplorer.forms.DashboardForm - Form for querying the database.
- lyprox.patients.forms.DataFileForm - Accept and process a CSV file that can then be parsed to batch-create a number of patients at once.
- lyprox.patients.forms.DatasetForm - Form to create and edit datasets, based on their model definition.
- lyprox.patients.forms.DiagnoseForm - Form to create and edit diagnoses, based on their model definition. Nothing special is happening here: Only some widgets are defined for the few fields of the models.Diagnose model and a loop over all implemented LNLs saves us some hard-coding of a long list of widgets for the node levels.
- lyprox.patients.forms.PatientForm - Form to create and edit patients, based on their model definition. Most notably, it includes custom cleaning methods like _compute_age that take - possibly sensitive - inputs and convert them into the - less sensitive - information we actually care about and want to store.
- lyprox.patients.forms.TumorForm - Form to create and edit tumors, based on their model definition. Very straightforward, not much custom validation. This class basically just defines how some of the fields that are already defined in models.Tumor...
- lyprox.riskpredictor.forms.InferenceResultForm - Form for creating a new InferenceResult instance.
lyprox.loggers.ModelLoggerMixin
- lyprox.accounts.models.Institution - Class for an institution like a hospital/clinic.
- lyprox.accounts.models.User - Extending the base functionality of the default User class.
- lyprox.patients.models.Dataset - A collection of patients, usually importet from a CSV file in a GitHub repo.
- lyprox.patients.models.Diagnose - Model describing the diagnosis of one side of a patient's neck with regard to their lymphaitc metastatic involvement.
- lyprox.patients.models.Patient - The representation of a patient in the database.
- lyprox.patients.models.Tumor - Model to describe a patient's tumor in detail.
- lyprox.riskpredictor.models.InferenceResult - Results of an inference run of the lymph-model package.
lyprox.loggers.ViewLoggerMixin
- lyprox.dataexplorer.views.DashboardView - Use the forms.DashboardForm and the patients.models.Patient model along with the query functions to extract the requested information from the database and render it into the HTML response displaying the lymphatic patterns of progression.
- lyprox.patients.views.CreateDatasetView - Create a dataset from a form.
- lyprox.patients.views.CreateDiagnoseView - Add a diagnose for a patient's lymphatic system.
- lyprox.patients.views.CreatePatientView - View used to create a new patient entry in the database.
- lyprox.patients.views.CreateTumorView - Create a tumor and add it to a given patient.
- lyprox.patients.views.DatasetListView - View that displays all datasets in a list.
- lyprox.patients.views.DatasetView - View that serves the respective Dataset CSV file.
- lyprox.patients.views.DeleteDatasetView - Remove this dataset from the database, and all associated patients with it.
- lyprox.patients.views.DeleteDiagnoseView - Remove a particular diagnose frm a patient's entry.
- lyprox.patients.views.DeletePatientView - Remove this patient from the database.
- lyprox.patients.views.DeleteTumorView - Delete a patient's tumor.
- lyprox.patients.views.PatientListView - Renders a list of all patients in the database showing basic information and links to the individual entries. Depending from where this view is called, the list is filterable.
- lyprox.patients.views.UpdateDiagnoseView - Change a patient's diagnose.
- lyprox.patients.views.UpdatePatientView - Update a given patient's information.
- lyprox.patients.views.UpdateTumorView - Update specifics of a patient's tumor.
- lyprox.riskpredictor.views.AddInferenceResultView - View for adding a new InferenceResult instance.
- lyprox.riskpredictor.views.ChooseInferenceResultView - View for choosing a InferenceResult instance.
- lyprox.riskpredictor.views.RiskPredictionView - View for the dashboard of the riskpredictor app.
lyprox.patients.filters.PatientFilter.Meta - Define which django model this should act on.
lyprox.patients.forms.DatasetForm.Meta - The underlying model.
lyprox.patients.forms.DiagnoseForm.Meta - Connects the form to the model.
lyprox.patients.forms.PatientForm.Meta - Indicate which model this acts on.
lyprox.patients.forms.TumorForm.Meta - Specifies the corresponding model.
lyprox.patients.mixins.LockedDatasetMixin - Mixin for the Patient, Tumor and Diagnose classes to block any editing or deletion attempts when the Dataset they belong to is locked.
- lyprox.patients.models.Diagnose - Model describing the diagnosis of one side of a patient's neck with regard to their lymphaitc metastatic involvement.
- lyprox.patients.models.Patient - The representation of a patient in the database.
- lyprox.patients.models.Tumor - Model to describe a patient's tumor in detail.
lyprox.patients.models.Dataset.Meta - Undocumented
lyprox.patients.models.Diagnose.Modalities - Class that aims to replicate the functionality of TextChoices from Django's enum types, but with the added functionality of storing the sensitivity & specificity of the respective modality.
lyprox.riskpredictor.forms.InferenceResultForm.Meta - Undocumented
lyprox.riskpredictor.models.InferenceResult.Meta - Undocumented
mdx_math.MathExtension
- lyprox.templatetags.customtags.MyMathExtension - Undocumented
type
- lyprox.patients.models.Diagnose.MetaModality - Meta class for providing the classmethod attributes to the Modalities class similar to what Django's enum types have.